Variant report

Variant	rs13314769
Chromosome Location	chr3:69794698-69794699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69787097..69790813-chr3:69794141..69797560,3	K562	blood:

Variant related genes	Relation type
ENSG00000187098	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13322505	1.00[AFR][1000 genomes]
rs9810852	0.87[AFR][1000 genomes]
rs9828760	1.00[AFR][1000 genomes]
rs9850776	1.00[AFR][1000 genomes]
rs9864251	1.00[AFR][1000 genomes]
rs9873049	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69790000-69794800	Weak transcription	Gastric	stomach
2	chr3:69790200-69797400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:69790400-69795200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:69790600-69795200	Enhancers	Psoas Muscle	Psoas
5	chr3:69790600-69802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:69790800-69794800	Weak transcription	Aorta	Aorta
7	chr3:69790800-69796200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:69790800-69797400	Weak transcription	Brain Anterior Caudate	brain
9	chr3:69791000-69796000	Weak transcription	Brain Substantia Nigra	brain
10	chr3:69791000-69796200	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:69791000-69798200	Enhancers	Fetal Thymus	thymus
12	chr3:69791200-69795200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:69791400-69795200	Enhancers	Ovary	ovary
14	chr3:69791800-69794800	Weak transcription	Lung	lung
15	chr3:69792000-69797400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:69792200-69798000	Enhancers	Adipose Nuclei	Adipose
17	chr3:69792600-69794800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:69792800-69798400	Enhancers	Thymus	Thymus
19	chr3:69793200-69796000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:69793200-69798600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr3:69793400-69795000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:69793600-69795000	Genic enhancers	K562	blood
23	chr3:69793600-69795600	Enhancers	Right Atrium	heart
24	chr3:69793600-69796800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:69794200-69795000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:69794200-69795000	Enhancers	Pancreas	Pancrea
27	chr3:69794200-69801200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:69794400-69795000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr3:69794400-69795000	Enhancers	Esophagus	oesophagus
30	chr3:69794400-69795000	Enhancers	Left Ventricle	heart
31	chr3:69794400-69795000	Enhancers	Right Ventricle	heart
32	chr3:69794400-69795000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr3:69794400-69795200	Enhancers	Fetal Muscle Leg	muscle
34	chr3:69794400-69795400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr3:69794400-69795400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr3:69794400-69799000	Enhancers	NHDF-Ad	bronchial
37	chr3:69794400-69799600	Enhancers	NHLF	lung
38	chr3:69794400-69800400	Enhancers	Fetal Heart	heart
39	chr3:69794600-69794800	Enhancers	Brain Angular Gyrus	brain
40	chr3:69794600-69794800	Enhancers	Colon Smooth Muscle	Colon
41	chr3:69794600-69795200	Weak transcription	Fetal Stomach	stomach
42	chr3:69794600-69798200	Enhancers	Brain Hippocampus Middle	brain

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