Variant report

Variant	rs13322505
Chromosome Location	chr3:69801975-69801976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69795100..69796668-chr3:69799958..69802171,2	K562	blood:
2	chr3:69798311..69800015-chr3:69801658..69803370,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13314769	1.00[AFR][1000 genomes]
rs9810852	0.87[AFR][1000 genomes]
rs9828760	1.00[AFR][1000 genomes]
rs9850776	1.00[AFR][1000 genomes]
rs9864251	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9873049	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69790600-69802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:69795000-69802000	Weak transcription	Lung	lung
3	chr3:69795000-69802200	Weak transcription	Esophagus	oesophagus
4	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
5	chr3:69796200-69802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:69797200-69802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:69797800-69802000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:69798000-69802000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:69798000-69802000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:69798000-69802400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:69798000-69803400	Weak transcription	Right Atrium	heart
12	chr3:69798000-69810400	Weak transcription	K562	blood
13	chr3:69798400-69802000	Weak transcription	A549	lung
14	chr3:69798400-69803600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:69798600-69802200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:69799000-69802200	Weak transcription	Aorta	Aorta
17	chr3:69799000-69802400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:69799600-69802400	Enhancers	Adipose Nuclei	Adipose
19	chr3:69800400-69803200	Weak transcription	Fetal Heart	heart
20	chr3:69800600-69809400	Weak transcription	Right Ventricle	heart
21	chr3:69801000-69802200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:69801000-69809800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:69801200-69802000	Weak transcription	Left Ventricle	heart
24	chr3:69801200-69802200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:69801200-69805800	Weak transcription	Psoas Muscle	Psoas
26	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:69801400-69802400	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:69801400-69802600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:69801600-69802000	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:69801800-69802000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:69801800-69802400	ZNF genes & repeats	Ovary	ovary

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