Variant report

Variant	rs1331669
Chromosome Location	chr9:13152778-13152779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10733255	0.93[AFR][1000 genomes]
rs10738330	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10809914	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1118320	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1331671	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1412107	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1412108	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1556422	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1576686	1.00[AFR][1000 genomes]
rs1831533	0.87[AFR][1000 genomes]
rs1888745	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1999394	0.93[AFR][1000 genomes]
rs4740546	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4740549	0.82[YRI][hapmap]
rs7044949	0.86[AFR][1000 genomes]
rs7856615	0.83[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13103200-13163400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:13103200-13175600	Weak transcription	HepG2	liver
3	chr9:13106000-13153400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:13121600-13225200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:13122600-13186400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:13135400-13223600	Weak transcription	Lung	lung
7	chr9:13136000-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:13137400-13152800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:13138200-13161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:13138800-13159800	Weak transcription	Aorta	Aorta
11	chr9:13138800-13191800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:13139000-13188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:13139800-13174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:13140200-13153600	Weak transcription	Fetal Intestine Small	intestine
15	chr9:13140200-13157000	Weak transcription	Placenta	Placenta
16	chr9:13140200-13161200	Weak transcription	Fetal Stomach	stomach
17	chr9:13140200-13167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:13140200-13174800	Weak transcription	Right Ventricle	heart
19	chr9:13141000-13181600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:13141000-13197800	Weak transcription	NHDF-Ad	bronchial
21	chr9:13141200-13188200	Weak transcription	NHLF	lung
22	chr9:13142200-13155800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:13143600-13157200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:13143600-13202200	Weak transcription	Pancreas	Pancrea
25	chr9:13143800-13152800	Weak transcription	Fetal Kidney	kidney
26	chr9:13143800-13164800	Weak transcription	Fetal Brain Female	brain
27	chr9:13143800-13167800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:13144800-13160000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:13145000-13153400	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:13145000-13161600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:13145400-13163600	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:13145400-13163600	Weak transcription	Brain Substantia Nigra	brain
33	chr9:13145400-13203200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:13145600-13163400	Weak transcription	Brain Germinal Matrix	brain
36	chr9:13146200-13163000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:13146600-13153600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:13146600-13202400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:13147000-13178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:13147600-13153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:13147600-13155800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:13147600-13160000	Weak transcription	Brain Anterior Caudate	brain
43	chr9:13147800-13156200	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:13147800-13167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:13148000-13156000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:13148000-13157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:13148000-13167600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:13148200-13156000	Weak transcription	Osteobl	bone
49	chr9:13148200-13167600	Weak transcription	NH-A	brain
50	chr9:13148800-13155800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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