Variant report

Variant	rs1831533
Chromosome Location	chr9:13194629-13194630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10733255	0.81[AFR][1000 genomes]
rs10809914	0.87[AFR][1000 genomes]
rs1118320	0.87[AFR][1000 genomes]
rs1331669	0.87[AFR][1000 genomes]
rs1331671	0.87[AFR][1000 genomes]
rs1556422	0.81[AFR][1000 genomes]
rs1576686	0.87[AFR][1000 genomes]
rs1999394	0.81[AFR][1000 genomes]
rs4740546	0.81[AFR][1000 genomes]
rs7856615	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13121600-13225200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:13135400-13223600	Weak transcription	Lung	lung
3	chr9:13141000-13197800	Weak transcription	NHDF-Ad	bronchial
4	chr9:13143600-13202200	Weak transcription	Pancreas	Pancrea
5	chr9:13145400-13203200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:13146600-13202400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:13153200-13194800	Weak transcription	Fetal Kidney	kidney
9	chr9:13156800-13201400	Weak transcription	Psoas Muscle	Psoas
10	chr9:13163600-13202000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:13164200-13248600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:13164200-13258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:13168000-13201800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:13175800-13203000	Weak transcription	Fetal Intestine Small	intestine
15	chr9:13176400-13202600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr9:13177600-13197400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:13179800-13196600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:13180000-13202200	Weak transcription	Fetal Brain Female	brain
19	chr9:13182000-13194800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:13182000-13203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:13182200-13203200	Weak transcription	HMEC	breast
22	chr9:13182200-13226800	Weak transcription	Fetal Brain Male	brain
23	chr9:13182800-13196400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:13184600-13199400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:13184800-13196600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:13185400-13196400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr9:13186400-13202000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:13186400-13212000	Weak transcription	Gastric	stomach
29	chr9:13187800-13196600	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:13188000-13195400	Strong transcription	Adipose Nuclei	Adipose
31	chr9:13188000-13196600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:13188000-13220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:13188200-13196400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:13188200-13196400	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:13188400-13196200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:13188800-13203200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:13189000-13202200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:13189000-13221000	Weak transcription	NHLF	lung
39	chr9:13189000-13268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:13189800-13195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:13189800-13202200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:13189800-13202200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr9:13190200-13196600	Strong transcription	Fetal Lung	lung
44	chr9:13190200-13202200	Weak transcription	A549	lung
45	chr9:13190400-13201600	Weak transcription	Fetal Heart	heart
46	chr9:13190400-13202000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:13190400-13202200	Weak transcription	Brain Substantia Nigra	brain
48	chr9:13190400-13202400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:13190400-13202400	Weak transcription	Aorta	Aorta
50	chr9:13190400-13202400	Weak transcription	Right Ventricle	heart

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