Variant report

Variant	rs13316849
Chromosome Location	chr3:21558981-21558982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35813182	1.00[AMR][1000 genomes]
rs73138849	1.00[AMR][1000 genomes]
rs73819365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21515800-21563000	Weak transcription	Fetal Stomach	stomach
2	chr3:21526200-21559000	Weak transcription	Aorta	Aorta
3	chr3:21550000-21561800	Weak transcription	Fetal Brain Male	brain
4	chr3:21553200-21574400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:21558000-21559200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:21558000-21559200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:21558000-21559200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:21558000-21559200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:21558200-21559000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:21558600-21559000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:21558800-21559000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:21558800-21559200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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