Variant report

Variant	rs13317029
Chromosome Location	chr3:142961223-142961224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142954351..142956458-chr3:142960764..142964653,3	K562	blood:
2	chr3:142926220..142927861-chr3:142959735..142962076,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10470450	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4553947	0.83[EUR][1000 genomes]
rs4602353	0.85[EUR][1000 genomes]
rs4839604	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60818974	0.83[EUR][1000 genomes]
rs62279677	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6775385	0.82[EUR][1000 genomes]
rs6785254	0.80[EUR][1000 genomes]
rs73006209	0.96[EUR][1000 genomes]
rs7627757	0.96[EUR][1000 genomes]
rs7631070	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs894180	0.83[EUR][1000 genomes]
rs9829667	0.83[EUR][1000 genomes]
rs9842703	0.94[CEU][hapmap]
rs9849247	0.83[EUR][1000 genomes]
rs985247	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9862637	0.82[EUR][1000 genomes]
rs9879103	0.83[EUR][1000 genomes]
rs990739	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142954800-142962000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:142955200-142972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:142956400-142964600	Weak transcription	K562	blood
4	chr3:142956600-142966000	Weak transcription	Fetal Kidney	kidney
5	chr3:142957000-142961800	Enhancers	HUVEC	blood vessel
6	chr3:142957800-142965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:142959000-142962200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:142959400-142961400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:142959400-142961600	Enhancers	NHDF-Ad	bronchial
10	chr3:142959400-142964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:142959600-142961800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:142959600-142962200	Enhancers	HSMMtube	muscle
13	chr3:142959800-142961600	Enhancers	Ovary	ovary
14	chr3:142959800-142962000	Enhancers	Fetal Stomach	stomach
15	chr3:142960000-142962000	Enhancers	HSMM	muscle
16	chr3:142960200-142961800	Enhancers	NH-A	brain
17	chr3:142960200-142962000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:142960200-142963000	Weak transcription	Fetal Thymus	thymus
19	chr3:142960600-142962000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:142960800-142961400	Enhancers	Fetal Brain Male	brain
21	chr3:142960800-142963600	Enhancers	Placenta	Placenta
22	chr3:142961000-142961400	Strong transcription	Primary T cells from cord blood	blood
23	chr3:142961000-142961600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:142961200-142970400	Weak transcription	Fetal Lung	lung

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