Variant report

Variant	rs4602353
Chromosome Location	chr3:142962544-142962545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10470450	0.84[EUR][1000 genomes]
rs13317029	0.85[EUR][1000 genomes]
rs4839604	0.85[EUR][1000 genomes]
rs62279677	0.81[EUR][1000 genomes]
rs73006209	0.82[EUR][1000 genomes]
rs7627757	0.82[EUR][1000 genomes]
rs7631070	0.84[EUR][1000 genomes]
rs9842703	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs985247	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142955200-142972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:142956400-142964600	Weak transcription	K562	blood
3	chr3:142956600-142966000	Weak transcription	Fetal Kidney	kidney
4	chr3:142957800-142965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:142959400-142964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:142960200-142963000	Weak transcription	Fetal Thymus	thymus
7	chr3:142960800-142963600	Enhancers	Placenta	Placenta
8	chr3:142961200-142970400	Weak transcription	Fetal Lung	lung
9	chr3:142961400-142963200	Weak transcription	Primary T cells from cord blood	blood
10	chr3:142962000-142963200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:142962000-142966000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:142962200-142963200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:142962200-142963400	Weak transcription	HSMMtube	muscle
14	chr3:142962200-142966200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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