Variant report

Variant	rs13317514
Chromosome Location	chr3:111407891-111407892
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13318497	0.90[EUR][1000 genomes]
rs13323806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6796920	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7611571	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7628128	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7630578	0.85[EUR][1000 genomes]
rs7646687	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9809793	0.95[EUR][1000 genomes]
rs9822709	0.85[EUR][1000 genomes]
rs9838059	0.85[EUR][1000 genomes]
rs9844477	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9875538	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111395800-111413400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111396400-111408200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:111396600-111409200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:111397200-111408000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:111397200-111408200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:111399000-111409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:111400400-111408200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:111400800-111408400	Weak transcription	HMEC	breast
9	chr3:111400800-111409000	Weak transcription	HSMMtube	muscle
10	chr3:111400800-111411800	Weak transcription	Primary B cells from cord blood	blood
11	chr3:111401000-111412000	Weak transcription	Stomach Mucosa	stomach
12	chr3:111401200-111411600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:111402600-111409000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111402600-111411600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:111404000-111408200	Weak transcription	Pancreas	Pancrea
16	chr3:111404000-111409000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:111404000-111409200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:111404000-111409200	Weak transcription	Fetal Thymus	thymus
19	chr3:111405400-111409600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:111405800-111408200	Enhancers	Fetal Intestine Large	intestine
21	chr3:111406000-111410400	Enhancers	Primary T cells from cord blood	blood
22	chr3:111406200-111409000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:111406200-111426800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:111407200-111408000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:111407400-111409400	Weak transcription	Hela-S3	cervix
26	chr3:111407600-111409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:111407600-111409400	Weak transcription	A549	lung
28	chr3:111407600-111411600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:111407600-111411600	Weak transcription	Fetal Intestine Small	intestine
30	chr3:111407600-111412800	Weak transcription	Small Intestine	intestine
31	chr3:111407800-111408600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links