Variant report

Variant	rs7611571
Chromosome Location	chr3:111412525-111412526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111410859..111413288-chr3:111426130..111428349,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13317514	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13318497	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13323806	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6796920	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628128	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630578	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7646687	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9809793	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9822709	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838059	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9844477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875538	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111395800-111413400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111406200-111426800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:111407600-111412800	Weak transcription	Small Intestine	intestine
4	chr3:111409400-111412600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:111409400-111413400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:111409400-111414000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:111409400-111415600	Enhancers	Hela-S3	cervix
8	chr3:111409600-111412600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:111409600-111412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:111409600-111413400	Weak transcription	Fetal Thymus	thymus
11	chr3:111409600-111415000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:111410000-111413000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:111410000-111413000	Weak transcription	NHDF-Ad	bronchial
14	chr3:111410200-111413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:111410200-111413600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:111410200-111414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:111410200-111417200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:111410200-111426800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:111410200-111428400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:111410200-111433200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:111410400-111412600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:111410400-111413000	Weak transcription	NHEK	skin
23	chr3:111410400-111413200	Weak transcription	HMEC	breast
24	chr3:111410400-111413200	Weak transcription	Osteobl	bone
25	chr3:111410400-111413400	Weak transcription	HSMM	muscle
26	chr3:111410400-111413400	Weak transcription	NH-A	brain
27	chr3:111410400-111414200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:111410600-111413000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:111410600-111443400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:111410800-111418200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:111410800-111419000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:111411600-111412600	Enhancers	Fetal Heart	heart
33	chr3:111411600-111412800	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:111411600-111413200	Enhancers	GM12878-XiMat	blood
35	chr3:111411600-111413400	Enhancers	Primary B cells from peripheral blood	blood
36	chr3:111411600-111413600	Enhancers	Fetal Intestine Small	intestine
37	chr3:111411600-111413800	Enhancers	Fetal Intestine Large	intestine
38	chr3:111411600-111416200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:111412200-111412600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr3:111412200-111413200	Weak transcription	A549	lung
41	chr3:111412200-111414400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:111412200-111426800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr3:111412400-111412600	Weak transcription	Primary B cells from cord blood	blood
44	chr3:111412400-111412800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr3:111412400-111415200	Enhancers	HSMMtube	muscle
46	chr3:111412400-111415400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:111412400-111426800	Weak transcription	Primary T cells from cord blood	blood
48	chr3:111412400-111426800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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