Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10779990	0.89[ASN][1000 genomes]
rs11128069	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12633482	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12714730	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12714731	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12714732	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34469393	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3923215	0.81[ASN][1000 genomes]
rs62274620	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6551392	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7428094	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7428598	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7429534	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7619508	0.81[ASN][1000 genomes]
rs7626554	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7646011	0.88[ASN][1000 genomes]
rs9310109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835094	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9868686	0.81[ASN][1000 genomes]
rs9883199	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9883603	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89148200-89154600	Weak transcription	Fetal Brain Male	brain
2	chr3:89148600-89153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:89151800-89153600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:89152800-89156600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:89153000-89156400	Weak transcription	Left Ventricle	heart

Quick Search: