Variant report
| Variant | rs6551392 |
|---|---|
| Chromosome Location | chr3:89150823-89150824 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10779990 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11128069 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12633482 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12714730 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12714731 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12714732 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13317993 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34469393 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3923215 | 0.81[ASN][1000 genomes] |
| rs62274620 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7428094 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7428598 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7429534 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7619508 | 0.81[ASN][1000 genomes] |
| rs7626554 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7646011 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9310109 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9835094 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9868686 | 0.81[ASN][1000 genomes] |
| rs9883199 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9883603 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877159 | chr3:89018866-89207222 | Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv998460 | chr3:89064073-89188335 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv536638 | chr3:89064073-89188335 | Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv834760 | chr3:89085529-89299398 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:89148200-89154600 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr3:89148600-89153400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
