Variant report

Variant	rs13319723
Chromosome Location	chr3:177713782-177713783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16828884	0.86[EUR][1000 genomes]
rs9817294	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177712600-177713800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:177712800-177713800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:177713000-177714000	Enhancers	Primary T cells from cord blood	blood
4	chr3:177713000-177714000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:177713000-177714000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:177713200-177713800	Enhancers	HSMM	muscle
7	chr3:177713200-177714000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:177713600-177713800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:177713600-177713800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:177713600-177713800	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links