Variant report

Variant	rs16828884
Chromosome Location	chr3:177711262-177711263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177709402..177711641-chr3:177711937..177714399,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13319723	0.86[EUR][1000 genomes]
rs1895070	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2080668	1.00[ASN][1000 genomes]
rs2863063	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4502028	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4533667	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4579029	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56965193	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57660332	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283967	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283968	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283969	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283970	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283971	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283972	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283973	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283974	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283975	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283978	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283979	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62283981	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6763564	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6764673	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6767647	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6788525	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6804858	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6805270	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs727335	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430015	1.00[ASN][1000 genomes]
rs7645340	1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9290631	1.00[ASN][1000 genomes]
rs9290633	1.00[ASN][1000 genomes]
rs9757291	1.00[ASN][1000 genomes]
rs9852369	1.00[ASN][1000 genomes]
rs9861535	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177710000-177711800	Enhancers	Fetal Intestine Large	intestine
2	chr3:177710200-177711600	Enhancers	Fetal Intestine Small	intestine
3	chr3:177710200-177711600	Enhancers	HepG2	liver
4	chr3:177711200-177711600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:177711200-177711800	Enhancers	Placenta Amnion	Placenta Amnion

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