Variant report

Variant	rs62283971
Chromosome Location	chr3:177720667-177720668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16828884	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1895070	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080668	1.00[ASN][1000 genomes]
rs2863063	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502028	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4533667	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579029	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56965193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57660332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283967	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283968	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283969	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283970	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283972	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283975	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283979	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62283981	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764673	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788525	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804858	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805270	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727335	1.00[ASN][1000 genomes]
rs7430015	1.00[ASN][1000 genomes]
rs7645340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290631	1.00[ASN][1000 genomes]
rs9290633	1.00[ASN][1000 genomes]
rs9757291	1.00[ASN][1000 genomes]
rs9852369	1.00[ASN][1000 genomes]
rs9861535	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177717800-177722600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:177718400-177725000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:177718600-177722400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:177718600-177722600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:177719000-177721200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr3:177719000-177722200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:177719200-177722000	Enhancers	Dnd41	blood
8	chr3:177720000-177720800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:177720000-177721000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:177720000-177721200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:177720000-177722400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:177720000-177722800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:177720000-177724800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:177720000-177725200	Enhancers	Primary T cells from cord blood	blood
15	chr3:177720200-177722400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:177720400-177722000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:177720400-177722600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:177720600-177722600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:177720600-177723200	Weak transcription	Primary B cells from cord blood	blood

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