Variant report
| Variant | rs9290633 |
|---|---|
| Chromosome Location | chr3:177741176-177741177 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:177740310..177743198-chr3:177745813..177748789,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs16828884 | 1.00[ASN][1000 genomes] |
| rs1895070 | 1.00[ASN][1000 genomes] |
| rs2080668 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2863063 | 1.00[ASN][1000 genomes] |
| rs4502028 | 1.00[ASN][1000 genomes] |
| rs4533667 | 1.00[ASN][1000 genomes] |
| rs4579029 | 1.00[ASN][1000 genomes] |
| rs56965193 | 1.00[ASN][1000 genomes] |
| rs57660332 | 1.00[ASN][1000 genomes] |
| rs62283967 | 1.00[ASN][1000 genomes] |
| rs62283968 | 1.00[ASN][1000 genomes] |
| rs62283969 | 1.00[ASN][1000 genomes] |
| rs62283970 | 1.00[ASN][1000 genomes] |
| rs62283971 | 1.00[ASN][1000 genomes] |
| rs62283972 | 1.00[ASN][1000 genomes] |
| rs62283973 | 1.00[ASN][1000 genomes] |
| rs62283974 | 1.00[ASN][1000 genomes] |
| rs62283975 | 1.00[ASN][1000 genomes] |
| rs62283978 | 1.00[ASN][1000 genomes] |
| rs62283979 | 1.00[ASN][1000 genomes] |
| rs62283981 | 1.00[ASN][1000 genomes] |
| rs6763564 | 1.00[ASN][1000 genomes] |
| rs6764673 | 1.00[ASN][1000 genomes] |
| rs6767647 | 1.00[ASN][1000 genomes] |
| rs6788525 | 1.00[ASN][1000 genomes] |
| rs6804858 | 1.00[ASN][1000 genomes] |
| rs6805270 | 1.00[ASN][1000 genomes] |
| rs727335 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7430015 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7645340 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9290631 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9757291 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9852369 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9861535 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931055 | chr3:177229521-177889872 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv829805 | chr3:177662113-177805003 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9290633 | TPBG | trans | lymphoblastoid | seeQTL |
| rs9290633 | TRAT1 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:177739800-177742200 | Weak transcription | Aorta | Aorta |
| 2 | chr3:177740000-177741600 | Enhancers | Colon Smooth Muscle | Colon |
