Variant report

Variant	rs13321323
Chromosome Location	chr3:98827871-98827872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2949162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55941748	1.00[EUR][1000 genomes]
rs60455565	1.00[EUR][1000 genomes]
rs6800403	1.00[EUR][1000 genomes]
rs7622589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7629965	1.00[EUR][1000 genomes]
rs7638893	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639833	1.00[EUR][1000 genomes]
rs7653869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877215	chr3:98804408-98884699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98818000-98828600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:98826400-98828200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:98826600-98828000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:98826600-98828000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:98826600-98828000	Enhancers	HMEC	breast
6	chr3:98826600-98828200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:98826600-98828400	Enhancers	NHDF-Ad	bronchial
8	chr3:98826800-98828000	Enhancers	NHEK	skin
9	chr3:98826800-98828800	Enhancers	HUVEC	blood vessel
10	chr3:98827000-98828000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:98827000-98828000	Enhancers	HSMM	muscle
12	chr3:98827000-98828000	Enhancers	NH-A	brain
13	chr3:98827000-98828000	Enhancers	Osteobl	bone
14	chr3:98827200-98828000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:98827400-98828000	Enhancers	Adipose Nuclei	Adipose
16	chr3:98827600-98836600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:98827800-98830000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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