Variant report

Variant	rs6800403
Chromosome Location	chr3:98686700-98686701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13321323	1.00[EUR][1000 genomes]
rs2949162	1.00[EUR][1000 genomes]
rs7634027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638893	1.00[EUR][1000 genomes]
rs7653869	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98683400-98687600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:98683800-98690000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:98684400-98690200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:98684400-98690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:98684800-98689400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:98685200-98687400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:98685200-98690400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:98685200-98690400	Enhancers	HUVEC	blood vessel
9	chr3:98685400-98688000	Enhancers	Osteobl	bone
10	chr3:98685800-98687000	Flanking Active TSS	NHDF-Ad	bronchial
11	chr3:98685800-98687200	Active TSS	A549	lung
12	chr3:98685800-98687600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:98686000-98686800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:98686000-98687200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:98686000-98687600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:98686000-98687800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:98686200-98688000	Enhancers	NHLF	lung
18	chr3:98686200-98690200	Weak transcription	HSMM	muscle
19	chr3:98686400-98686800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:98686400-98689800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:98686400-98692000	Enhancers	NHEK	skin
22	chr3:98686600-98687200	Flanking Active TSS	HMEC	breast
23	chr3:98686600-98688000	Enhancers	NH-A	brain

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