Variant report

Variant	rs13321676
Chromosome Location	chr3:178546819-178546820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11916614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640049	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61432821	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73053730	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055796	1.00[ASN][1000 genomes]
rs9837342	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837378	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839672	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858217	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877109	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877743	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1841956	chr3:178545276-178550530	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541600-178547000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:178541800-178547800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
5	chr3:178542000-178547200	Weak transcription	Fetal Stomach	stomach
6	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
7	chr3:178543600-178551200	Weak transcription	Ovary	ovary
8	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:178546400-178547400	Weak transcription	GM12878-XiMat	blood
10	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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