Variant report

Variant	rs9837378
Chromosome Location	chr3:178556266-178556267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11916614	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321676	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640049	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61432821	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73053730	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055796	1.00[ASN][1000 genomes]
rs9837342	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839672	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858217	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870179	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877109	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877743	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv592646	chr3:178555598-178566442	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
3	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:178550400-178562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:178556200-178558400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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