Variant report

Variant	rs1332203
Chromosome Location	chr9:9506817-9506818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10739194	0.82[JPT][hapmap]
rs10816145	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1332200	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1332201	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1332202	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[ASN][1000 genomes]
rs1412401	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4742605	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4742606	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4742607	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs612092	0.82[JPT][hapmap]
rs625165	0.82[JPT][hapmap]
rs625900	0.82[JPT][hapmap]
rs626391	0.82[JPT][hapmap]
rs627247	0.82[JPT][hapmap]
rs638230	0.81[CEU][hapmap]
rs6477400	0.85[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs649649	0.81[CEU][hapmap]
rs652649	0.80[CEU][hapmap]
rs656074	1.00[ASW][hapmap]
rs668205	0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[AMR][1000 genomes]
rs672211	0.85[CEU][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7855661	0.86[GIH][hapmap]
rs7869896	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs828817	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs828821	0.82[JPT][hapmap]
rs828826	0.84[GIH][hapmap]
rs828836	0.85[CEU][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs844166	0.93[JPT][hapmap]
rs864353	0.88[JPT][hapmap]
rs9407426	0.88[JPT][hapmap]
rs9886769	0.85[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528425	chr9:9437674-9556992	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1034257	chr9:9444744-9526138	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv1016118	chr9:9444744-9582169	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1020932	chr9:9481247-9534062	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv613309	chr9:9495226-9574336	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv613310	chr9:9506433-9540141	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9501400-9508800	Weak transcription	Fetal Brain Male	brain

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