Variant report

Variant	rs828826
Chromosome Location	chr9:9537991-9537992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10739194	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1326769	0.92[CHB][hapmap];0.89[CHD][hapmap];0.91[ASN][1000 genomes]
rs1332203	0.84[GIH][hapmap]
rs1359698	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs587796	0.91[ASN][1000 genomes]
rs591074	0.96[YRI][hapmap]
rs596331	0.91[CHB][hapmap]
rs606365	0.96[YRI][hapmap]
rs609641	0.95[CEU][hapmap]
rs612092	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs616850	0.95[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap]
rs625165	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs625517	0.91[CHB][hapmap]
rs625900	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs626307	0.91[CHB][hapmap]
rs626391	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs626804	0.91[CHB][hapmap]
rs627247	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs628077	0.91[CHB][hapmap]
rs638230	0.91[CEU][hapmap];0.84[MEX][hapmap]
rs639168	0.91[CHB][hapmap]
rs642281	0.91[CHB][hapmap]
rs647038	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs647190	0.82[CHB][hapmap]
rs6477400	0.86[CEU][hapmap]
rs649649	0.91[CEU][hapmap];0.81[TSI][hapmap]
rs652649	0.90[CEU][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs653896	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs660717	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs668205	0.81[CHD][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs671823	0.95[CEU][hapmap];0.93[YRI][hapmap]
rs672211	0.86[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.80[EUR][1000 genomes]
rs684508	0.95[CEU][hapmap]
rs69781	0.83[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs736041	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs736042	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7850579	0.86[CEU][hapmap]
rs828817	0.86[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs828820	0.97[ASN][1000 genomes]
rs828821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs828822	0.91[CHB][hapmap]
rs828824	0.91[CHB][hapmap]
rs828831	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap]
rs828836	0.86[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs828837	0.83[ASW][hapmap];0.91[CEU][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs844166	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs864353	0.88[JPT][hapmap]
rs9407426	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9408769	0.87[CEU][hapmap]
rs9408770	0.83[CEU][hapmap]
rs9408772	0.88[CEU][hapmap]
rs9886769	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528425	chr9:9437674-9556992	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1016118	chr9:9444744-9582169	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv613309	chr9:9495226-9574336	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613310	chr9:9506433-9540141	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv466131	chr9:9516348-9540141	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv613311	chr9:9516348-9540141	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv613312	chr9:9516348-9572790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv892267	chr9:9516348-9588336	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv613313	chr9:9516348-9591059	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv466132	chr9:9516348-9605832	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv613314	chr9:9516348-9605832	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv466133	chr9:9516348-9609283	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv613315	chr9:9516348-9609283	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1830087	chr9:9517017-9538589	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv466134	chr9:9526138-9605832	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv613316	chr9:9526138-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv466135	chr9:9526811-9605832	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv613317	chr9:9526811-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv892268	chr9:9533788-9599213	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9534800-9538200	Enhancers	Fetal Heart	heart
2	chr9:9535000-9538200	Enhancers	Fetal Brain Male	brain
3	chr9:9535600-9538200	Enhancers	Fetal Brain Female	brain

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