Variant report

Variant	rs13322146
Chromosome Location	chr3:101493772-101493773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101489808..101491819-chr3:101492154..101494837,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3897906	1.00[CEU][hapmap]
rs7611497	1.00[ASW][hapmap]
rs7640584	1.00[AMR][1000 genomes]
rs9681946	1.00[AMR][1000 genomes]
rs9682021	1.00[AMR][1000 genomes]
rs9873837	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv963500	chr3:101481412-101496033	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101445600-101497400	Weak transcription	Fetal Heart	heart
2	chr3:101477200-101497400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:101477400-101497600	Weak transcription	Right Ventricle	heart
4	chr3:101477600-101497400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:101478000-101497400	Weak transcription	NHEK	skin
6	chr3:101478600-101497400	Weak transcription	A549	lung
7	chr3:101478600-101497400	Weak transcription	K562	blood
8	chr3:101479000-101497400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:101479200-101497400	Weak transcription	NHLF	lung
10	chr3:101480400-101497400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:101482000-101497400	Weak transcription	HUVEC	blood vessel
12	chr3:101483000-101497400	Weak transcription	Brain Germinal Matrix	brain
13	chr3:101483200-101497400	Weak transcription	Fetal Intestine Small	intestine
14	chr3:101483800-101497200	Weak transcription	Fetal Stomach	stomach
15	chr3:101484200-101497400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:101484200-101497400	Weak transcription	Hela-S3	cervix
17	chr3:101484200-101497400	Weak transcription	NHDF-Ad	bronchial
18	chr3:101484400-101495800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:101484400-101496400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:101484400-101497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:101484400-101497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:101484400-101497200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:101484400-101497200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:101484400-101497200	Weak transcription	Fetal Muscle Leg	muscle
25	chr3:101484400-101497400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:101484400-101497400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:101484400-101497400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:101484400-101497400	Weak transcription	Brain Substantia Nigra	brain
29	chr3:101484400-101497400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:101484400-101497400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr3:101484400-101497400	Weak transcription	NH-A	brain
32	chr3:101484400-101497400	Weak transcription	Osteobl	bone
33	chr3:101484400-101497600	Weak transcription	Liver	Liver
34	chr3:101484400-101497600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:101484400-101497600	Weak transcription	Left Ventricle	heart
36	chr3:101484400-101497600	Weak transcription	Lung	lung
37	chr3:101484600-101497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:101484600-101497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:101485400-101497400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:101485400-101497400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:101485400-101497400	Weak transcription	Adipose Nuclei	Adipose
42	chr3:101485400-101497600	Weak transcription	Placenta	Placenta
43	chr3:101485800-101497200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:101485800-101497400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:101485800-101497400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr3:101486000-101497200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:101486000-101497200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:101486000-101497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:101486000-101497400	Weak transcription	Fetal Lung	lung
50	chr3:101486000-101497400	Weak transcription	HMEC	breast

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