Variant report

Variant	rs7640584
Chromosome Location	chr3:101451055-101451056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101442986..101444875-chr3:101449623..101452459,2	K562	blood:
2	chr3:101442812..101446564-chr3:101447514..101451312,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182504	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13322146	1.00[AMR][1000 genomes]
rs34474055	0.86[AFR][1000 genomes]
rs34525894	0.86[AFR][1000 genomes]
rs7611497	0.86[AFR][1000 genomes]
rs7625077	0.88[AFR][1000 genomes]
rs9681946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682021	1.00[AMR][1000 genomes]
rs9873837	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101444600-101452800	Weak transcription	Spleen	Spleen
2	chr3:101444600-101453200	Weak transcription	Pancreas	Pancrea
3	chr3:101444600-101454800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101444800-101453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:101444800-101454200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:101445000-101451200	Weak transcription	Small Intestine	intestine
7	chr3:101445000-101453000	Weak transcription	Stomach Mucosa	stomach
8	chr3:101445000-101453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:101445200-101452800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:101445200-101453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:101445400-101453000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:101445400-101455600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:101445400-101455600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:101445600-101452400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:101445600-101454600	Strong transcription	Fetal Muscle Trunk	muscle
16	chr3:101445600-101456400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:101445600-101497400	Weak transcription	Fetal Heart	heart
18	chr3:101445800-101452800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:101445800-101453400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:101445800-101454200	Strong transcription	HSMM	muscle
21	chr3:101445800-101454400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr3:101445800-101454600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:101445800-101454800	Strong transcription	Fetal Thymus	thymus
24	chr3:101445800-101456200	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr3:101445800-101456200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:101446200-101451200	Strong transcription	Fetal Brain Female	brain
27	chr3:101446200-101454200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:101446200-101454200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:101446200-101454200	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:101446200-101455600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:101446200-101455600	Strong transcription	Thymus	Thymus
32	chr3:101446200-101455600	Strong transcription	Dnd41	blood
33	chr3:101446200-101455800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:101446200-101455800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr3:101446200-101456000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:101446400-101451400	Strong transcription	Brain Germinal Matrix	brain
37	chr3:101446400-101454400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:101446400-101455600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:101446800-101454200	Strong transcription	Fetal Stomach	stomach
40	chr3:101446800-101455400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:101446800-101455800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:101447000-101455800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:101447000-101455800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:101447000-101455800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:101447200-101453800	Strong transcription	Fetal Intestine Small	intestine
46	chr3:101447200-101454000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:101447200-101455600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:101447400-101454000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:101447800-101453200	Strong transcription	Fetal Lung	lung
50	chr3:101447800-101455600	Strong transcription	Skeletal Muscle Female	skeletal muscle

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