Variant report

Variant	rs13322481
Chromosome Location	chr3:84703011-84703012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13318416	1.00[EUR][1000 genomes]
rs9812194	1.00[EUR][1000 genomes]
rs9862516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760745	chr3:84208364-84783259	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998578	chr3:84521514-84773582	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536615	chr3:84521514-84773582	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460745	chr3:84644186-84779079	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv590851	chr3:84644186-84779079	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv1014928	chr3:84653836-84773582	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv536616	chr3:84653836-84773582	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv590852	chr3:84679083-84727898	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv1000924	chr3:84683816-84711713	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
10	esv3381298	chr3:84689266-85030314	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv3463413	chr3:84697662-84703960	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3502609	chr3:84698462-84704060	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	nsv1000815	chr3:84698671-84711713	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3502605	chr3:84698812-84703960	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	esv3463414	chr3:84699049-84703249	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3463415	chr3:84699332-84703033	Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3502604	chr3:84699332-84703051	Enhancers	n/a	n/a	inside rSNPs	n/a
18	esv9176	chr3:84699352-84703041	Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv3463416	chr3:84699374-84703019	Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv3502610	chr3:84699379-84703033	Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv21430	chr3:84699605-84703015	Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv1825620	chr3:84699766-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a
23	esv1827428	chr3:84699766-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a
24	esv1829365	chr3:84699766-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv1831769	chr3:84699766-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a
26	nsv590865	chr3:84699766-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a
27	esv1827934	chr3:84699766-84709148	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	esv1830701	chr3:84699766-84709148	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
29	esv1832478	chr3:84699766-84709148	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
30	nsv590874	chr3:84699817-84703011	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84703000-84703200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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