Variant report

Variant	rs13323044
Chromosome Location	chr3:179438101-179438102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr3:179437999-179438258	MCF-7	breast:	n/a	chr3:179438092-179438101 chr3:179438090-179438104
2	GATA3	chr3:179438025-179438269	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179371467..179373049-chr3:179436446..179438177,2	MCF-7	breast:
2	chr3:179432128..179435155-chr3:179435820..179439123,3	MCF-7	breast:

Variant related genes	Relation type
USP13	TF binding region
ENSG00000058056	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12330678	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13326401	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28495971	0.94[AFR][1000 genomes]
rs6780889	1.00[CEU][hapmap]
rs9852681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9867929	0.94[AFR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179384800-179443800	Weak transcription	Esophagus	oesophagus
2	chr3:179385000-179439200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:179385000-179448400	Weak transcription	Fetal Brain Male	brain
4	chr3:179391000-179444000	Weak transcription	Pancreas	Pancrea
5	chr3:179391000-179452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:179391400-179439200	Weak transcription	NHEK	skin
7	chr3:179397800-179439200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:179399000-179459800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:179406600-179449400	Weak transcription	Spleen	Spleen
11	chr3:179407800-179439200	Weak transcription	Brain Angular Gyrus	brain
12	chr3:179408200-179439800	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:179408600-179439400	Weak transcription	Fetal Thymus	thymus
14	chr3:179416200-179448400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:179419000-179439200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:179419400-179439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:179419600-179444000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:179420200-179478800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:179422400-179439200	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:179422800-179460600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:179423000-179439200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:179423400-179448200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:179423400-179448400	Weak transcription	Gastric	stomach
24	chr3:179424000-179474800	Weak transcription	Fetal Kidney	kidney
25	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:179425200-179448400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:179425400-179439200	Weak transcription	Right Ventricle	heart
28	chr3:179425600-179439000	Weak transcription	Fetal Brain Female	brain
29	chr3:179425600-179443800	Weak transcription	Aorta	Aorta
30	chr3:179425600-179446600	Weak transcription	Fetal Intestine Large	intestine
31	chr3:179425800-179447000	Weak transcription	Placenta	Placenta
32	chr3:179426800-179439200	Weak transcription	Fetal Intestine Small	intestine
33	chr3:179427000-179439200	Weak transcription	Lung	lung
34	chr3:179427000-179457600	Weak transcription	Thymus	Thymus
35	chr3:179427200-179439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:179427200-179439200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:179427200-179439200	Weak transcription	Brain Anterior Caudate	brain
38	chr3:179427200-179439200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:179427200-179439200	Weak transcription	Hela-S3	cervix
40	chr3:179427400-179449200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:179427600-179439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:179428400-179439200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:179428800-179439000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:179428800-179439000	Weak transcription	Brain Germinal Matrix	brain
45	chr3:179428800-179439200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:179428800-179439200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:179428800-179439200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:179428800-179439200	Weak transcription	GM12878-XiMat	blood
49	chr3:179428800-179440600	Weak transcription	Primary B cells from cord blood	blood
50	chr3:179428800-179440600	Weak transcription	Fetal Lung	lung

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