The 2.0 version of rSNPBase

Variant report

Variant rs6780889
Chromosome Location chr3:179450423-179450424
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179391000-179452200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr3:179399000-179459800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
5 chr3:179422800-179460600 Weak transcription Duodenum Mucosa Duodenum
6 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
7 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr3:179427000-179457600 Weak transcription Thymus Thymus
9 chr3:179428800-179452200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:179428800-179456800 Weak transcription HUVEC blood vessel
11 chr3:179428800-179460000 Weak transcription Brain Substantia Nigra brain
12 chr3:179429000-179466200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr3:179434400-179450600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr3:179434600-179452200 Weak transcription A549 lung
15 chr3:179435400-179450600 Weak transcription HSMMtube muscle
16 chr3:179435600-179460000 Weak transcription NHDF-Ad bronchial
17 chr3:179436000-179459800 Weak transcription Small Intestine intestine
18 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr3:179438200-179452200 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr3:179439600-179452200 Weak transcription NHEK skin
23 chr3:179439800-179452400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
25 chr3:179441200-179460600 Weak transcription Brain Cingulate Gyrus brain
26 chr3:179441400-179459800 Weak transcription Hela-S3 cervix
27 chr3:179444200-179460000 Weak transcription Pancreas Pancrea
28 chr3:179444600-179451400 Weak transcription Esophagus oesophagus
29 chr3:179444600-179460000 Weak transcription Monocytes-CD14+_RO01746 blood
30 chr3:179444600-179461800 Weak transcription Primary monocytes fromperipheralblood blood
31 chr3:179444800-179462600 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr3:179446000-179451400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr3:179446000-179452200 Weak transcription HMEC breast
34 chr3:179446600-179450800 Strong transcription Cortex derived primary cultured neurospheres brain
35 chr3:179446600-179451000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr3:179446600-179451400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr3:179446600-179451800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr3:179446600-179452200 Strong transcription Primary hematopoietic stem cells short term culture blood
39 chr3:179446800-179450600 Strong transcription HUES48 Cell Line embryonic stem cell
40 chr3:179446800-179450800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr3:179446800-179451400 Strong transcription iPS-20b Cell Line embryonic stem cell
42 chr3:179446800-179451800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr3:179446800-179451800 Strong transcription Fetal Adrenal Gland Adrenal Gland
44 chr3:179446800-179451800 Strong transcription Fetal Stomach stomach
45 chr3:179446800-179451800 Strong transcription Ovary ovary
46 chr3:179446800-179452000 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr3:179446800-179465600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr3:179446800-179466400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr3:179447000-179451000 Strong transcription HUES6 Cell Line embryonic stem cell
50 chr3:179447000-179451800 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015