The 2.0 version of rSNPBase

Variant report

Variant rs28631566
Chromosome Location chr3:179465543-179465544
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
3 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
4 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr3:179429000-179466200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
10 chr3:179446800-179465600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr3:179446800-179466400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr3:179447000-179465600 Strong transcription Fetal Muscle Trunk muscle
13 chr3:179449400-179503400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr3:179450000-179478400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr3:179450000-179484200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr3:179450000-179487200 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr3:179450400-179474000 Weak transcription Placenta Placenta
18 chr3:179450400-179483200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr3:179450400-179491800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr3:179451800-179478800 Weak transcription Esophagus oesophagus
21 chr3:179452800-179475000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr3:179452800-179478600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr3:179452800-179483000 Weak transcription A549 lung
24 chr3:179453200-179507600 Weak transcription NHEK skin
25 chr3:179458200-179483200 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr3:179458400-179470000 Weak transcription Brain Germinal Matrix brain
27 chr3:179458400-179472000 Weak transcription Primary B cells from cord blood blood
28 chr3:179458400-179483200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr3:179458600-179474000 Weak transcription Osteobl bone
30 chr3:179460400-179473400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr3:179460400-179478800 Weak transcription Pancreas Pancrea
32 chr3:179460800-179472600 Weak transcription Brain Anterior Caudate brain
33 chr3:179460800-179472600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr3:179460800-179478400 Weak transcription Fetal Intestine Large intestine
35 chr3:179460800-179478400 Weak transcription NHDF-Ad bronchial
36 chr3:179460800-179478600 Weak transcription Hela-S3 cervix
37 chr3:179460800-179478600 Weak transcription NH-A brain
38 chr3:179460800-179478800 Weak transcription Brain Substantia Nigra brain
39 chr3:179460800-179478800 Weak transcription Small Intestine intestine
40 chr3:179461000-179469800 Weak transcription Brain Cingulate Gyrus brain
41 chr3:179461000-179472000 Weak transcription Psoas Muscle Psoas
42 chr3:179461000-179472200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr3:179461000-179472400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr3:179461000-179472400 Weak transcription Brain Hippocampus Middle brain
45 chr3:179461000-179472600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr3:179461000-179472800 Weak transcription Primary T cells from cord blood blood
47 chr3:179461000-179474600 Weak transcription GM12878-XiMat blood
48 chr3:179461000-179476000 Weak transcription Gastric stomach
49 chr3:179461000-179478400 Weak transcription Primary hematopoietic stem cells blood
50 chr3:179461000-179478400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015