Variant report

Variant	rs13323195
Chromosome Location	chr3:159586299-159586300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159585927..159588192-chr3:159592324..159594371,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13320912	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs6785153	1.00[CHB][hapmap]
rs9829527	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159572400-159589400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:159579400-159587400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:159579400-159589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:159579400-159589600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:159579600-159589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:159579600-159589600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:159579600-159589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:159579600-159599200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:159579600-159600600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:159579800-159588600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:159580000-159590200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:159580200-159587800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:159580200-159589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:159580200-159589400	Weak transcription	NHEK	skin
15	chr3:159580200-159597600	Weak transcription	Spleen	Spleen
16	chr3:159583000-159600600	Weak transcription	Fetal Stomach	stomach
17	chr3:159583200-159586800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:159583600-159586800	Enhancers	Brain Hippocampus Middle	brain
19	chr3:159583600-159589600	Weak transcription	Lung	lung
20	chr3:159583600-159589600	Weak transcription	Psoas Muscle	Psoas
21	chr3:159583600-159597600	Weak transcription	Aorta	Aorta
22	chr3:159584000-159588800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:159584000-159599200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:159584200-159586600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:159584400-159587200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:159584400-159588600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:159584400-159589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:159584400-159591200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:159584600-159588800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:159584600-159590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:159584800-159588000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:159584800-159588600	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:159585000-159587200	Strong transcription	NH-A	brain
34	chr3:159585000-159590000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:159585000-159590000	Weak transcription	Hela-S3	cervix
36	chr3:159585000-159598800	Weak transcription	Fetal Brain Female	brain
37	chr3:159585200-159587000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:159585200-159587400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr3:159585200-159588200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:159585200-159589400	Weak transcription	HUVEC	blood vessel
41	chr3:159585200-159593200	Weak transcription	Adipose Nuclei	Adipose
42	chr3:159585400-159586600	Strong transcription	Osteobl	bone
43	chr3:159585400-159587600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:159585400-159588600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:159585600-159586400	Weak transcription	HMEC	breast
46	chr3:159585600-159586600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:159585600-159587200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:159585600-159587400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:159585600-159587600	Strong transcription	HSMM	muscle
50	chr3:159585600-159588600	Weak transcription	A549	lung

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