Variant report

Variant	rs1332331
Chromosome Location	chr10:91092607-91092608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91086403..91089519-chr10:91091273..91094339,4	K562	blood:

Variant related genes	Relation type
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17119610	0.88[AFR][1000 genomes]
rs55742600	0.84[AFR][1000 genomes]
rs74146914	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91087200-91093600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:91088000-91099800	Weak transcription	Gastric	stomach
3	chr10:91088200-91093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:91088200-91093400	Weak transcription	Esophagus	oesophagus
5	chr10:91089400-91092800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
7	chr10:91091200-91094000	Enhancers	Fetal Brain Male	brain
8	chr10:91091400-91092800	Weak transcription	Spleen	Spleen
9	chr10:91091600-91093400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr10:91091600-91094200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:91091800-91092800	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr10:91091800-91092800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr10:91091800-91092800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:91091800-91092800	Flanking Active TSS	Fetal Kidney	kidney
15	chr10:91091800-91092800	Flanking Active TSS	Fetal Lung	lung
16	chr10:91091800-91092800	Active TSS	Rectal Smooth Muscle	rectum
17	chr10:91091800-91092800	Active TSS	GM12878-XiMat	blood
18	chr10:91091800-91093000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:91091800-91093000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr10:91091800-91093000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:91091800-91093000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:91091800-91093000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr10:91091800-91093000	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:91091800-91093200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr10:91091800-91093200	Active TSS	Ovary	ovary
29	chr10:91091800-91093200	Flanking Active TSS	HepG2	liver
30	chr10:91091800-91093400	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr10:91091800-91093400	Flanking Active TSS	Osteobl	bone
32	chr10:91091800-91093600	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr10:91091800-91093600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr10:91091800-91093600	Flanking Active TSS	NHEK	skin
35	chr10:91091800-91093800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr10:91091800-91093800	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr10:91091800-91094000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr10:91091800-91094000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:91091800-91094000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:91091800-91094000	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr10:91091800-91094200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:91091800-91094200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr10:91091800-91094200	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr10:91091800-91094200	Flanking Active TSS	Liver	Liver
45	chr10:91091800-91094200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr10:91092000-91092800	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr10:91092000-91092800	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:91092000-91092800	Active TSS	Psoas Muscle	Psoas
49	chr10:91092000-91092800	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr10:91092000-91092800	Active TSS	Right Atrium	heart

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