Variant report

Variant	rs55742600
Chromosome Location	chr10:91112229-91112230
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91105141..91107376-chr10:91111380..91113140,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1332331	0.84[AFR][1000 genomes]
rs17119610	0.96[AFR][1000 genomes]
rs74146914	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91105000-91112400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:91105600-91112400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr10:91105800-91113200	Enhancers	Fetal Intestine Large	intestine
4	chr10:91106000-91112600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:91106200-91113400	Enhancers	Fetal Heart	heart
6	chr10:91106400-91112400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:91106400-91113200	Enhancers	Placenta	Placenta
8	chr10:91108400-91113000	Enhancers	Stomach Mucosa	stomach
9	chr10:91108600-91122200	Weak transcription	Spleen	Spleen
10	chr10:91109400-91112400	Enhancers	Small Intestine	intestine
11	chr10:91109800-91112400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:91110000-91113000	Enhancers	Fetal Muscle Leg	muscle
13	chr10:91110200-91113000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:91110400-91112400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:91110400-91112400	Flanking Active TSS	GM12878-XiMat	blood
16	chr10:91110400-91112800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:91110400-91113000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:91110400-91113200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:91110600-91112400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:91110600-91113000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:91110800-91112400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:91110800-91112400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr10:91110800-91112400	Enhancers	Fetal Stomach	stomach
24	chr10:91110800-91113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:91111000-91112400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr10:91111000-91112400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:91111000-91112800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:91111000-91112800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:91111000-91112800	Flanking Active TSS	A549	lung
30	chr10:91111000-91113200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr10:91111200-91112400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:91111200-91112400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:91111200-91112400	Enhancers	Right Atrium	heart
34	chr10:91111200-91112400	Flanking Active TSS	Hela-S3	cervix
35	chr10:91111200-91112600	Enhancers	Ovary	ovary
36	chr10:91111200-91113000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:91111200-91113000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr10:91111400-91112400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:91111400-91112400	Enhancers	Psoas Muscle	Psoas
40	chr10:91111400-91112800	Enhancers	Adipose Nuclei	Adipose
41	chr10:91111400-91113000	Enhancers	HMEC	breast
42	chr10:91111600-91112400	Enhancers	Liver	Liver
43	chr10:91111600-91112400	Enhancers	Brain Cingulate Gyrus	brain
44	chr10:91111600-91112400	Enhancers	Colon Smooth Muscle	Colon
45	chr10:91111600-91112600	Active TSS	HSMM	muscle
46	chr10:91111800-91112400	Enhancers	H9 Cell Line	embryonic stem cell
47	chr10:91111800-91112400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:91111800-91112400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:91111800-91112400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:91111800-91112400	Enhancers	Left Ventricle	heart

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