Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:67352650-67353456	HepG2	liver:	n/a	n/a
2	FOXA2	chr3:67352821-67353328	HepG2	liver:	n/a	n/a
3	TEAD4	chr3:67352769-67353369	HepG2	liver:	n/a	n/a
4	EP300	chr3:67352891-67353332	HepG2	liver:	n/a	n/a
5	EP300	chr3:67352935-67353363	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:67352967-67353326	HepG2	liver:	n/a	n/a
7	FOXA1	chr3:67352791-67353301	HepG2	liver:	n/a	n/a
8	JUND	chr3:67352866-67353369	HepG2	liver:	n/a	chr3:67352940-67352954 chr3:67353148-67353162
9	POLR2A	chr3:67352901-67353493	H1-neurons	neurons:	n/a	n/a
10	MYBL2	chr3:67352715-67353301	HepG2	liver:	n/a	n/a
11	SMC3	chr3:67352906-67353324	HepG2	liver:	n/a	n/a
12	RAD21	chr3:67353133-67353320	HepG2	liver:	n/a	n/a
13	TBP	chr3:67352901-67353325	HepG2	liver:	n/a	n/a
14	MAFF	chr3:67352617-67353309	HepG2	liver:	n/a	n/a
15	RFX5	chr3:67353034-67353278	HepG2	liver:	n/a	chr3:67353159-67353174 chr3:67353159-67353174 chr3:67353159-67353174
16	MAX	chr3:67353192-67353360	HepG2	liver:	n/a	n/a
17	ARID3A	chr3:67352717-67353363	HepG2	liver:	n/a	n/a
18	POLR2A	chr3:67352941-67353466	H1-neurons	neurons:	n/a	n/a
19	CEBPB	chr3:67352914-67353384	HepG2	liver:	n/a	n/a
20	FOXA1	chr3:67352742-67353379	HepG2	liver:	n/a	n/a
21	FOXA1	chr3:67352819-67353337	HepG2	liver:	n/a	n/a
22	JUN	chr3:67352783-67353362	HepG2	liver:	n/a	chr3:67352940-67352954 chr3:67353148-67353162
23	MAFK	chr3:67352917-67353268	HepG2	liver:	n/a	n/a
24	HNF4G	chr3:67353112-67353288	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000241884	TF binding region

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12330438	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490270	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34568841	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68019502	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819679	0.81[ASN][1000 genomes]
rs9848814	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67346800-67355600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:67347200-67355800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:67350600-67355800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:67352000-67353600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:67352000-67353800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:67352000-67353800	Enhancers	HepG2	liver
8	chr3:67352200-67353400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:67352800-67353400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:67353000-67353400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:67353000-67353400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:67353000-67353400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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