Variant report

Variant	rs9848814
Chromosome Location	chr3:67371368-67371369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12330438	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13325134	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1490270	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34568841	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs55873642	0.82[EUR][1000 genomes]
rs68019502	0.89[ASN][1000 genomes]
rs881100	0.82[EUR][1000 genomes]
rs9812536	0.91[EUR][1000 genomes]
rs9819679	0.87[EUR][1000 genomes]
rs9839677	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9863902	0.90[EUR][1000 genomes]
rs9883624	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67368000-67373000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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