Variant report

Variant	rs13328991
Chromosome Location	chr12:63030374-63030375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995253..63000922-chr12:63028846..63036538,11	MCF-7	breast:
2	chr12:63018644..63021186-chr12:63028824..63030627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506442	1.00[CEU][hapmap]
rs1532394	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs17097966	1.00[CEU][hapmap]
rs17098038	1.00[CEU][hapmap]
rs17098087	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17098092	0.87[EUR][1000 genomes]
rs17098096	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17098098	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17120341	1.00[CEU][hapmap]
rs4763172	1.00[CEU][hapmap]
rs4763173	1.00[CEU][hapmap]
rs4763176	1.00[CEU][hapmap]
rs61919494	0.86[EUR][1000 genomes]
rs61919495	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7136696	1.00[CEU][hapmap]
rs7299376	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7299603	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7307786	1.00[CEU][hapmap]
rs7309338	1.00[CEU][hapmap]
rs7310196	0.86[JPT][hapmap]
rs73325251	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7964791	1.00[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63032600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63026600-63034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
4	chr12:63027200-63034000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:63027600-63030600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:63028000-63031800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:63028800-63030400	Enhancers	HepG2	liver
8	chr12:63029000-63030400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:63029000-63031400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:63029200-63030400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:63029200-63030400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:63029200-63030400	Enhancers	Brain Anterior Caudate	brain
13	chr12:63029200-63030400	Enhancers	Brain Cingulate Gyrus	brain
14	chr12:63029200-63030400	Enhancers	Brain Substantia Nigra	brain
15	chr12:63029400-63030400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr12:63029400-63030400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr12:63029400-63030400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:63029600-63032800	Weak transcription	A549	lung
19	chr12:63030000-63030400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:63030000-63031400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:63030000-63034200	Weak transcription	Osteobl	bone
22	chr12:63030000-63034400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:63030000-63038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:63030000-63040400	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:63030000-63040800	Weak transcription	Brain Angular Gyrus	brain
26	chr12:63030200-63030400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr12:63030200-63030400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr12:63030200-63030400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links