Variant report

Variant	rs17098098
Chromosome Location	chr12:63021708-63021709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63000207..63003968-chr12:63019804..63022918,4	MCF-7	breast:
2	chr12:62996090..62998530-chr12:63021670..63024116,3	MCF-7	breast:
3	chr12:63017661..63021132-chr12:63021138..63024799,3	K562	blood:
4	chr12:62999244..63001612-chr12:63021259..63022888,2	K562	blood:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506442	1.00[CEU][hapmap]
rs13328991	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1532394	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs17097966	1.00[CEU][hapmap]
rs17098038	1.00[CEU][hapmap]
rs17098087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17098092	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17098096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17120341	1.00[CEU][hapmap]
rs4763172	1.00[CEU][hapmap]
rs4763173	1.00[CEU][hapmap]
rs4763176	1.00[CEU][hapmap]
rs61919494	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61919495	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7136696	1.00[CEU][hapmap]
rs7299376	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7299603	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7307786	1.00[CEU][hapmap]
rs7309338	1.00[CEU][hapmap]
rs7310196	1.00[JPT][hapmap]
rs73325251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7964791	1.00[CEU][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
3	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:63007800-63024800	Weak transcription	NH-A	brain
5	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
6	chr12:63010200-63025200	Weak transcription	HSMMtube	muscle
7	chr12:63010600-63022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:63011600-63023200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:63012400-63023800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:63012600-63023400	Weak transcription	A549	lung
11	chr12:63013800-63025200	Weak transcription	Right Atrium	heart
12	chr12:63016200-63022400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:63016400-63022400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:63019400-63022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:63019400-63025000	Weak transcription	Adipose Nuclei	Adipose
16	chr12:63019600-63025400	Weak transcription	Pancreas	Pancrea
17	chr12:63019800-63022400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:63019800-63022400	Weak transcription	Osteobl	bone
19	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:63019800-63025200	Weak transcription	Liver	Liver
22	chr12:63019800-63025800	Weak transcription	Placenta	Placenta
23	chr12:63020600-63021800	Enhancers	HMEC	breast
24	chr12:63020800-63022400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:63020800-63023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:63021000-63022600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:63021200-63022200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:63021200-63024000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr12:63021400-63022600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:63021400-63025200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:63021600-63023400	Weak transcription	Fetal Brain Male	brain

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