Variant report

Variant	rs13329390
Chromosome Location	chr15:73247677-73247678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28516420	0.91[AFR][1000 genomes]
rs28529041	1.00[AFR][1000 genomes]
rs28533198	1.00[AFR][1000 genomes]
rs28619314	0.84[AFR][1000 genomes]
rs28635892	1.00[AFR][1000 genomes]
rs28648433	0.91[AFR][1000 genomes]
rs28656329	0.81[AFR][1000 genomes]
rs28709578	1.00[AFR][1000 genomes]
rs28761233	0.82[AFR][1000 genomes]
rs28820870	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73238400-73253800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73246400-73247800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:73246600-73247800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:73247000-73247800	Enhancers	Fetal Kidney	kidney
5	chr15:73247000-73248000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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