Variant report

Variant	rs28529041
Chromosome Location	chr15:73261691-73261692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73261065..73262566-chr15:73288942..73290715,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13329390	1.00[AFR][1000 genomes]
rs28516420	0.91[AFR][1000 genomes]
rs28533198	1.00[AFR][1000 genomes]
rs28619314	0.84[AFR][1000 genomes]
rs28635892	1.00[AFR][1000 genomes]
rs28648433	0.91[AFR][1000 genomes]
rs28656329	0.81[AFR][1000 genomes]
rs28709578	1.00[AFR][1000 genomes]
rs28761233	0.82[AFR][1000 genomes]
rs28820870	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73254800-73263200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:73258000-73264400	Enhancers	Fetal Brain Male	brain
3	chr15:73259200-73263400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr15:73260000-73262000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr15:73260400-73262800	Weak transcription	Fetal Stomach	stomach
6	chr15:73260400-73263600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:73260400-73263800	Weak transcription	Colonic Mucosa	Colon
8	chr15:73260600-73262400	Weak transcription	Spleen	Spleen
9	chr15:73260800-73262200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:73261200-73263200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:73261200-73263400	Weak transcription	Right Atrium	heart
12	chr15:73261400-73262400	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:73261400-73262400	Weak transcription	Psoas Muscle	Psoas
14	chr15:73261400-73263200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:73261400-73263400	Weak transcription	Fetal Intestine Large	intestine
16	chr15:73261400-73263400	Weak transcription	Fetal Intestine Small	intestine
17	chr15:73261400-73263600	Weak transcription	Fetal Heart	heart
18	chr15:73261400-73263600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:73261600-73262400	Weak transcription	Fetal Brain Female	brain
20	chr15:73261600-73262800	Weak transcription	Fetal Lung	lung
21	chr15:73261600-73263000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:73261600-73263000	Weak transcription	Fetal Kidney	kidney

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