Variant report

Variant	rs13329415
Chromosome Location	chr15:93208458-93208459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93207992..93209553-chr15:93211342..93213959,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520711	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17524102	0.83[AMR][1000 genomes]
rs17524130	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17524193	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs206352	0.85[EUR][1000 genomes]
rs28366380	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28464253	0.89[EUR][1000 genomes]
rs28552970	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285740	0.89[EUR][1000 genomes]
rs28580510	0.85[EUR][1000 genomes]
rs28694094	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28726068	0.89[EUR][1000 genomes]
rs28804705	0.89[EUR][1000 genomes]
rs28848602	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93199600-93210000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93204000-93210600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:93207000-93208600	Enhancers	Fetal Thymus	thymus
4	chr15:93207200-93210200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:93207200-93211800	Enhancers	Fetal Muscle Trunk	muscle
6	chr15:93207200-93213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:93207400-93208600	Enhancers	Right Ventricle	heart
8	chr15:93207400-93210000	Enhancers	A549	lung
9	chr15:93207600-93208600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:93207600-93208600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:93207600-93208600	Enhancers	Brain Anterior Caudate	brain
12	chr15:93207600-93208800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:93207600-93209200	Enhancers	Brain Angular Gyrus	brain
14	chr15:93207600-93210200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:93207600-93211200	Enhancers	Pancreas	Pancrea
16	chr15:93207600-93211800	Enhancers	Fetal Muscle Leg	muscle
17	chr15:93207800-93208600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr15:93207800-93208600	Enhancers	Psoas Muscle	Psoas
19	chr15:93207800-93208800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr15:93207800-93209400	Enhancers	Fetal Brain Male	brain
21	chr15:93207800-93210000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:93207800-93211800	Enhancers	Liver	Liver
23	chr15:93207800-93211800	Enhancers	Fetal Stomach	stomach
24	chr15:93208000-93208600	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr15:93208000-93208800	Enhancers	Placenta	Placenta
26	chr15:93208000-93210200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:93208200-93208600	Enhancers	Aorta	Aorta
28	chr15:93208200-93208600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr15:93208200-93208600	Enhancers	Fetal Brain Female	brain
30	chr15:93208200-93208600	Enhancers	HSMM	muscle
31	chr15:93208200-93208800	Enhancers	Brain Substantia Nigra	brain
32	chr15:93208200-93208800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr15:93208200-93209000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr15:93208200-93209000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:93208200-93209000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:93208200-93209000	Enhancers	HSMMtube	muscle
37	chr15:93208200-93209000	Bivalent Enhancer	K562	blood
38	chr15:93208200-93209600	Enhancers	Stomach Mucosa	stomach
39	chr15:93208200-93211800	Enhancers	Fetal Heart	heart
40	chr15:93208200-93212000	Enhancers	Fetal Intestine Small	intestine
41	chr15:93208400-93208600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:93208400-93208600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:93208400-93208600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:93208400-93208800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:93208400-93208800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:93208400-93208800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:93208400-93208800	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:93208400-93208800	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr15:93208400-93208800	Active TSS	Colon Smooth Muscle	Colon
50	chr15:93208400-93208800	Active TSS	Pancreatic Islets	Pancreatic Islet

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