Variant report

Variant	rs28464253
Chromosome Location	chr15:93230841-93230842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93229511..93231688-chr15:93234852..93237530,2	MCF-7	breast:
2	chr15:93229485..93231177-chr15:93245143..93247617,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10520711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13329415	0.89[EUR][1000 genomes]
rs1437804	0.81[ASN][1000 genomes]
rs1437805	0.81[ASN][1000 genomes]
rs17524102	1.00[CEU][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17524130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17524193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs206352	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132615	0.81[ASN][1000 genomes]
rs2132617	0.81[ASN][1000 genomes]
rs2173060	0.81[ASN][1000 genomes]
rs28366380	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28398129	0.85[AFR][1000 genomes]
rs28552970	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs285733	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs285740	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694094	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28726068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28848602	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8024615	0.81[ASN][1000 genomes]
rs893371	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93214800-93232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93225000-93231800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:93225000-93232000	Weak transcription	Ovary	ovary
4	chr15:93226000-93234000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:93230200-93231000	Enhancers	Fetal Lung	lung
6	chr15:93230200-93231200	Enhancers	Fetal Muscle Leg	muscle
7	chr15:93230200-93231200	Enhancers	HSMM	muscle
8	chr15:93230400-93231000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:93230600-93231000	Enhancers	HSMMtube	muscle

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