Variant report
| Variant | rs893371 |
|---|---|
| Chromosome Location | chr15:93245002-93245003 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:93234896..93237315-chr15:93243650..93246374,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10520711 | 1.00[CHB][hapmap];0.88[GIH][hapmap] |
| rs1437804 | 0.81[ASN][1000 genomes] |
| rs1437805 | 0.81[ASN][1000 genomes] |
| rs17524130 | 1.00[CHB][hapmap] |
| rs17524193 | 1.00[CHB][hapmap];0.88[GIH][hapmap] |
| rs206352 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2132615 | 0.81[ASN][1000 genomes] |
| rs2132617 | 0.81[ASN][1000 genomes] |
| rs2173060 | 0.81[ASN][1000 genomes] |
| rs28464253 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285740 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28580510 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28726068 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28804705 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8024615 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037972 | chr15:92804908-93270761 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv904499 | chr15:92914795-93472582 | Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 163 gene(s) | inside rSNPs | diseases |
| 3 | nsv948738 | chr15:93070742-93728147 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 169 gene(s) | inside rSNPs | diseases |
| 4 | nsv1049490 | chr15:93134405-93591660 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 151 gene(s) | inside rSNPs | diseases |
| 5 | nsv1040501 | chr15:93177153-93286393 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
