Variant report

Variant	rs13330301
Chromosome Location	chr16:82374039-82374040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82299027..82301102-chr16:82373517..82376101,2	MCF-7	breast:
2	chr16:82364940..82366961-chr16:82373078..82375564,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11861006	1.00[EUR][1000 genomes]
rs12103242	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13334879	1.00[EUR][1000 genomes]
rs16956989	1.00[EUR][1000 genomes]
rs16957207	1.00[EUR][1000 genomes]
rs16957342	1.00[EUR][1000 genomes]
rs16957354	1.00[EUR][1000 genomes]
rs3843713	1.00[EUR][1000 genomes]
rs3901526	1.00[EUR][1000 genomes]
rs4405544	1.00[EUR][1000 genomes]
rs55838821	1.00[EUR][1000 genomes]
rs56872498	1.00[EUR][1000 genomes]
rs57628849	1.00[EUR][1000 genomes]
rs57746771	1.00[EUR][1000 genomes]
rs58650213	1.00[EUR][1000 genomes]
rs59073682	1.00[EUR][1000 genomes]
rs59169797	1.00[EUR][1000 genomes]
rs60548806	1.00[EUR][1000 genomes]
rs7189184	1.00[EUR][1000 genomes]
rs7201792	1.00[EUR][1000 genomes]
rs7201997	1.00[EUR][1000 genomes]
rs7203485	1.00[EUR][1000 genomes]
rs7204522	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73589708	1.00[EUR][1000 genomes]
rs73589710	1.00[EUR][1000 genomes]
rs73589728	1.00[EUR][1000 genomes]
rs73591673	1.00[EUR][1000 genomes]
rs74030314	1.00[EUR][1000 genomes]
rs74030315	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74032627	1.00[EUR][1000 genomes]
rs74032640	1.00[EUR][1000 genomes]
rs74032644	1.00[EUR][1000 genomes]
rs74032656	1.00[EUR][1000 genomes]
rs8049135	1.00[EUR][1000 genomes]
rs8056958	1.00[EUR][1000 genomes]
rs8057752	1.00[EUR][1000 genomes]
rs8063417	1.00[EUR][1000 genomes]
rs8063751	1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[EUR][1000 genomes]
rs9928499	1.00[EUR][1000 genomes]
rs9936348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv525789	chr16:82349244-82402803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
10	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1063681	chr16:82370611-82449440	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82366400-82374800	Weak transcription	Gastric	stomach
2	chr16:82372800-82375800	Enhancers	Brain Germinal Matrix	brain
3	chr16:82373200-82375600	Enhancers	Brain Anterior Caudate	brain
4	chr16:82373400-82374400	Enhancers	Brain Cingulate Gyrus	brain
5	chr16:82373400-82374600	Enhancers	Fetal Brain Male	brain
6	chr16:82373600-82374200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:82373600-82375000	Enhancers	Brain Substantia Nigra	brain
8	chr16:82373600-82375400	Enhancers	Brain Hippocampus Middle	brain
9	chr16:82373600-82375600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr16:82373800-82374600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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