Variant report

Variant	rs8056958
Chromosome Location	chr16:82316992-82316993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82315069..82317985-chr6:42750916..42752548,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12103242	1.00[EUR][1000 genomes]
rs13330301	1.00[EUR][1000 genomes]
rs16956989	1.00[EUR][1000 genomes]
rs16957207	1.00[EUR][1000 genomes]
rs4405544	1.00[EUR][1000 genomes]
rs55838821	1.00[EUR][1000 genomes]
rs56872498	1.00[EUR][1000 genomes]
rs57628849	1.00[EUR][1000 genomes]
rs57746771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59073682	1.00[EUR][1000 genomes]
rs59169797	1.00[EUR][1000 genomes]
rs60548806	1.00[EUR][1000 genomes]
rs7189184	1.00[EUR][1000 genomes]
rs7201792	1.00[EUR][1000 genomes]
rs7201997	1.00[EUR][1000 genomes]
rs7203485	1.00[EUR][1000 genomes]
rs7204522	1.00[EUR][1000 genomes]
rs73589708	1.00[EUR][1000 genomes]
rs73589710	1.00[EUR][1000 genomes]
rs73589728	1.00[EUR][1000 genomes]
rs74030314	1.00[EUR][1000 genomes]
rs74030315	1.00[EUR][1000 genomes]
rs74032627	1.00[EUR][1000 genomes]
rs74032640	1.00[EUR][1000 genomes]
rs74032644	1.00[EUR][1000 genomes]
rs74032656	1.00[EUR][1000 genomes]
rs8049135	1.00[EUR][1000 genomes]
rs8057752	1.00[EUR][1000 genomes]
rs8063417	1.00[EUR][1000 genomes]
rs8063751	1.00[EUR][1000 genomes]
rs9928499	1.00[EUR][1000 genomes]
rs9936348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv522270	chr16:82252003-82325530	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv907017	chr16:82296012-82319653	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv907018	chr16:82306551-82345583	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1847865	chr16:82309273-82317199	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82315200-82317000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr16:82315400-82317400	Enhancers	Fetal Heart	heart
3	chr16:82315600-82317000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr16:82316800-82317600	Enhancers	Left Ventricle	heart
5	chr16:82316800-82317800	Enhancers	Aorta	Aorta

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