Variant report

Variant	rs1333110
Chromosome Location	chr9:9402044-9402045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10114518	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122096	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10123763	0.83[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10739187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739188	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10739189	0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10759059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759062	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10816127	0.86[JPT][hapmap]
rs10977739	0.86[JPT][hapmap]
rs1332204	0.86[JPT][hapmap]
rs1332799	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs1412727	0.86[JPT][hapmap]
rs1475680	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1475690	0.83[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1556521	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1556523	0.82[JPT][hapmap]
rs1556524	0.81[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1556525	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1556526	0.83[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs16929291	1.00[YRI][hapmap]
rs1889102	0.82[JPT][hapmap]
rs1889104	0.82[JPT][hapmap]
rs2151323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2184079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2382004	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs2382005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3949639	0.86[JPT][hapmap]
rs4237176	0.93[EUR][1000 genomes]
rs4271025	0.82[JPT][hapmap]
rs4279660	0.82[JPT][hapmap]
rs4358853	0.82[JPT][hapmap]
rs4403465	0.91[JPT][hapmap]
rs4740981	0.82[JPT][hapmap]
rs4742595	0.81[JPT][hapmap]
rs7039878	0.84[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs7043400	0.86[JPT][hapmap]
rs7045413	0.89[EUR][1000 genomes]
rs7853243	0.85[EUR][1000 genomes]
rs7869483	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs914804	0.80[JPT][hapmap]
rs914805	0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs928475	0.84[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs986902	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892260	chr9:9350608-9474970	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv892261	chr9:9364637-9409606	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv892262	chr9:9382331-9445270	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases
10	nsv1015203	chr9:9385317-9435620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv1017939	chr9:9386437-9415009	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1033399	chr9:9387684-9417108	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9400800-9405800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:9401000-9406200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:9401800-9402600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links