Variant report

Variant	rs1556521
Chromosome Location	chr9:9390815-9390816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10114518	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10122096	1.00[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10123763	0.81[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs10739187	1.00[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10739188	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10739189	0.83[CEU][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes]
rs10759059	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10759060	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10759062	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs1332799	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1333110	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1475680	1.00[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs1475690	0.83[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1556524	0.95[EUR][1000 genomes]
rs1556525	0.95[EUR][1000 genomes]
rs1556526	0.83[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1889098	0.81[MEX][hapmap]
rs2151323	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2184079	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2382004	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs2382005	1.00[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4237176	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4403465	0.85[JPT][hapmap]
rs7039878	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs7045413	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7853243	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7869483	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs914805	0.95[EUR][1000 genomes]
rs928475	0.83[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs986902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018493	chr9:9348853-9395912	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892260	chr9:9350608-9474970	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv892261	chr9:9364637-9409606	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv892262	chr9:9382331-9445270	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases
11	nsv1029346	chr9:9385317-9395912	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
12	nsv1015203	chr9:9385317-9435620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv466130	chr9:9385640-9399018	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
14	nsv613307	chr9:9385640-9399018	Flanking Active TSS Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	nsv1017939	chr9:9386437-9415009	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv1033399	chr9:9387684-9417108	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9390800-9391000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:9390800-9391000	Enhancers	Pancreatic Islets	Pancreatic Islet

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