Variant report

Variant	rs13334885
Chromosome Location	chr16:73010476-73010477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73009653..73012489-chr16:73021292..73023966,2	MCF-7	breast:
2	chr16:73009955..73011584-chr16:73014836..73017573,2	MCF-7	breast:
3	chr16:73009571..73011449-chr16:73082075..73084598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

rs_ID	r²[population]
rs28566678	1.00[AFR][1000 genomes]
rs9927735	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9931022	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9932458	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
3	chr16:72993600-73019000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr16:72994400-73012400	Weak transcription	A549	lung
5	chr16:72995600-73011000	Weak transcription	Right Ventricle	heart
6	chr16:72996000-73011000	Weak transcription	Placenta	Placenta
7	chr16:72996000-73012200	Weak transcription	Spleen	Spleen
8	chr16:72996200-73017800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr16:72996400-73012400	Weak transcription	Small Intestine	intestine
10	chr16:72996800-73018800	Weak transcription	NHLF	lung
11	chr16:72997000-73017800	Weak transcription	HSMMtube	muscle
12	chr16:72998400-73018800	Weak transcription	Osteobl	bone
13	chr16:73001200-73019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:73002200-73019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr16:73003000-73018000	Weak transcription	Brain Substantia Nigra	brain
16	chr16:73003200-73012200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:73003200-73018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:73003400-73017600	Weak transcription	HSMM	muscle
19	chr16:73003600-73012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:73003800-73019000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr16:73004000-73012400	Weak transcription	Adipose Nuclei	Adipose
22	chr16:73004400-73011000	Weak transcription	Fetal Lung	lung
23	chr16:73005000-73019400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:73005400-73012400	Weak transcription	Esophagus	oesophagus
25	chr16:73005600-73012200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:73005600-73017600	Weak transcription	Brain Anterior Caudate	brain
27	chr16:73006600-73012600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr16:73007000-73018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr16:73007400-73017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr16:73007400-73019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr16:73007600-73013200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr16:73008000-73011400	Enhancers	Pancreas	Pancrea
33	chr16:73008000-73013200	Enhancers	Liver	Liver
34	chr16:73008200-73011200	Enhancers	Stomach Mucosa	stomach
35	chr16:73008400-73011400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:73008600-73019000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:73008800-73010600	Weak transcription	Gastric	stomach
38	chr16:73008800-73013800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr16:73008800-73023000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr16:73009000-73010600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr16:73009000-73012000	Weak transcription	HUVEC	blood vessel
42	chr16:73009000-73012400	Weak transcription	Ovary	ovary
43	chr16:73009000-73017000	Weak transcription	Brain Hippocampus Middle	brain
44	chr16:73009200-73013000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr16:73009400-73011400	Enhancers	Aorta	Aorta
46	chr16:73009600-73011000	Enhancers	Stomach Smooth Muscle	stomach
47	chr16:73009600-73011600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr16:73009600-73011800	Enhancers	Psoas Muscle	Psoas
49	chr16:73009600-73012400	Genic enhancers	HepG2	liver
50	chr16:73009800-73010800	Enhancers	Monocytes-CD14+_RO01746	blood

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