Variant report

Variant	rs9932458
Chromosome Location	chr16:73019416-73019417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:73018202..73027072-chr16:73088249..73094904,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271009	Chromatin interaction
ENSG00000140836	Chromatin interaction
ENSG00000272250	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13334885	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28566678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193704	1.00[MEX][hapmap]
rs9302643	1.00[MEX][hapmap]
rs9927735	1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931022	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
2	chr16:73007400-73019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:73008800-73023000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr16:73012800-73020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:73012800-73020400	Weak transcription	Fetal Intestine Small	intestine
6	chr16:73012800-73023400	Weak transcription	A549	lung
7	chr16:73013200-73023400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:73013200-73023600	Weak transcription	Small Intestine	intestine
9	chr16:73015200-73026200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:73015800-73019600	Weak transcription	Ovary	ovary
11	chr16:73015800-73024200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:73016200-73023200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr16:73016600-73022000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:73016800-73028000	Enhancers	Left Ventricle	heart
15	chr16:73017200-73020800	Weak transcription	HepG2	liver
16	chr16:73017200-73023800	Enhancers	Fetal Muscle Leg	muscle
17	chr16:73017200-73025400	Weak transcription	Fetal Kidney	kidney
18	chr16:73017400-73024600	Enhancers	Pancreas	Pancrea
19	chr16:73017800-73019800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr16:73017800-73020600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr16:73018000-73020000	Enhancers	Brain Substantia Nigra	brain
22	chr16:73018200-73020000	Weak transcription	Esophagus	oesophagus
23	chr16:73018200-73023600	Weak transcription	Fetal Intestine Large	intestine
24	chr16:73018200-73023800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr16:73018400-73023400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr16:73018400-73023400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr16:73018600-73020400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr16:73018600-73022400	Enhancers	Brain Anterior Caudate	brain
29	chr16:73018600-73023200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:73018600-73023200	Weak transcription	Stomach Mucosa	stomach
31	chr16:73018600-73023400	Weak transcription	Gastric	stomach
32	chr16:73018800-73019800	Enhancers	Brain Angular Gyrus	brain
33	chr16:73018800-73020200	Enhancers	Fetal Stomach	stomach
34	chr16:73018800-73020200	Enhancers	Osteobl	bone
35	chr16:73018800-73020400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr16:73018800-73020400	Flanking Active TSS	HSMMtube	muscle
37	chr16:73018800-73020800	Enhancers	Spleen	Spleen
38	chr16:73018800-73021000	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr16:73018800-73023400	Enhancers	NHDF-Ad	bronchial
40	chr16:73019000-73019600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr16:73019000-73019800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:73019000-73019800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr16:73019000-73020000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr16:73019000-73020200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr16:73019000-73020200	Enhancers	Brain Hippocampus Middle	brain
46	chr16:73019000-73020200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr16:73019000-73020400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr16:73019000-73020400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr16:73019000-73020400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr16:73019000-73020400	Enhancers	Cortex derived primary cultured neurospheres	brain

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