Variant report

Variant	rs13336525
Chromosome Location	chr16:81638178-81638179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81636634..81638844-chr16:81649159..81651625,2	MCF-7	breast:
2	chr16:81613179..81615947-chr16:81637579..81640462,2	MCF-7	breast:
3	chr16:81637544..81640592-chr16:81649582..81653175,4	MCF-7	breast:
4	chr16:81607192..81611602-chr16:81637708..81641189,4	MCF-7	breast:
5	chr16:81477731..81480467-chr16:81636322..81638899,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13330330	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13332592	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13338112	0.80[EUR][1000 genomes]
rs16955583	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16955585	0.80[EUR][1000 genomes]
rs16955597	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28550435	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28619178	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56310895	0.80[EUR][1000 genomes]
rs60525419	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6564895	0.80[EUR][1000 genomes]
rs7205559	0.86[EUR][1000 genomes]
rs73596473	0.81[AMR][1000 genomes]
rs73596491	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73596494	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73596498	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73598408	0.80[EUR][1000 genomes]
rs73598410	0.80[EUR][1000 genomes]
rs73598418	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74029200	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74029201	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74029202	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74031205	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74031217	0.80[EUR][1000 genomes]
rs9924458	0.80[EUR][1000 genomes]
rs9924761	0.81[AMR][1000 genomes]
rs9926699	0.80[EUR][1000 genomes]
rs9929965	0.80[EUR][1000 genomes]
rs9932038	0.80[EUR][1000 genomes]
rs9933726	0.80[EUR][1000 genomes]
rs9934970	0.81[AMR][1000 genomes]
rs9938967	0.80[EUR][1000 genomes]
rs9939220	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81588200-81640800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr16:81593200-81641200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr16:81616800-81640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:81617400-81648800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr16:81622400-81641400	Weak transcription	K562	blood
6	chr16:81622600-81641200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr16:81623400-81641200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr16:81623800-81643400	Weak transcription	Primary B cells from cord blood	blood
9	chr16:81624000-81639800	Weak transcription	Dnd41	blood
10	chr16:81624000-81641000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr16:81624400-81640400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr16:81625000-81640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:81625200-81639800	Weak transcription	Primary T cells from cord blood	blood
14	chr16:81629400-81641800	Weak transcription	GM12878-XiMat	blood
15	chr16:81629400-81645200	Genic enhancers	A549	lung
16	chr16:81630400-81641200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr16:81630800-81641200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:81631200-81639400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr16:81632200-81640400	Weak transcription	Thymus	Thymus
20	chr16:81633200-81641000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr16:81633200-81641200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr16:81633200-81641400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr16:81633200-81651200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr16:81633400-81639800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr16:81633400-81641200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr16:81633400-81644200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr16:81633600-81638600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr16:81633600-81641200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr16:81633600-81642800	Weak transcription	Colonic Mucosa	Colon
30	chr16:81633600-81665800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr16:81634200-81643000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr16:81634400-81643600	Weak transcription	Hela-S3	cervix
33	chr16:81634600-81641200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr16:81634600-81664000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr16:81634800-81638800	Weak transcription	Fetal Intestine Small	intestine
36	chr16:81634800-81641000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr16:81634800-81641000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr16:81634800-81641000	Weak transcription	Fetal Thymus	thymus
39	chr16:81635000-81638800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr16:81635000-81643000	Weak transcription	Small Intestine	intestine
41	chr16:81635000-81648400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:81635200-81638400	Weak transcription	NHLF	lung
43	chr16:81635200-81641800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr16:81635400-81639800	Weak transcription	Spleen	Spleen
45	chr16:81635400-81640800	Weak transcription	Fetal Intestine Large	intestine
46	chr16:81635400-81642400	Weak transcription	Colon Smooth Muscle	Colon
47	chr16:81635400-81643000	Weak transcription	Right Ventricle	heart
48	chr16:81635600-81638200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr16:81635600-81638400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr16:81635600-81638400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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