Variant report

Variant	rs73598418
Chromosome Location	chr16:81615470-81615471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81600677..81603897-chr16:81613066..81616910,4	MCF-7	breast:
2	chr16:81476449..81480009-chr16:81614671..81617341,4	MCF-7	breast:
3	chr16:81614429..81616933-chr16:81620116..81623654,4	MCF-7	breast:
4	chr16:81613714..81617708-chr16:81617863..81620538,5	MCF-7	breast:
5	chr16:81554501..81557421-chr16:81614817..81617531,2	MCF-7	breast:
6	chr16:81477202..81480429-chr16:81614800..81620694,9	MCF-7	breast:
7	chr16:81613896..81616758-chr16:81641074..81643658,2	MCF-7	breast:
8	chr16:81613179..81615947-chr16:81637579..81640462,2	MCF-7	breast:
9	chr16:81490893..81492885-chr16:81614585..81616374,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13330330	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332592	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332707	0.87[EUR][1000 genomes]
rs13336525	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13338112	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16955583	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16955585	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16955597	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28550435	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28619178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310895	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6564895	1.00[EUR][1000 genomes]
rs7199054	0.82[EUR][1000 genomes]
rs7205559	0.93[EUR][1000 genomes]
rs73596473	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73596491	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596494	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73596497	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73596498	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598408	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73598410	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74029200	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029201	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029202	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74031217	1.00[EUR][1000 genomes]
rs9924458	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9924761	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9926699	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9929965	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932038	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9933726	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9934970	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9938967	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9939220	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81585600-81628600	Weak transcription	GM12878-XiMat	blood
2	chr16:81588200-81640800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr16:81593200-81619400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:81593200-81621000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr16:81593200-81622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:81593200-81641200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr16:81593400-81619200	Weak transcription	K562	blood
8	chr16:81599000-81633000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:81600400-81616200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr16:81601000-81616200	Weak transcription	Primary T cells from cord blood	blood
11	chr16:81602000-81615600	Weak transcription	Thymus	Thymus
12	chr16:81602200-81616000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:81602200-81617800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr16:81602600-81616000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:81602600-81616400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:81602600-81619200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:81602800-81616000	Weak transcription	HSMM	muscle
18	chr16:81603200-81617200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr16:81603400-81616600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:81604000-81616200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:81604200-81616200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:81604200-81619200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr16:81604400-81616400	Weak transcription	Left Ventricle	heart
24	chr16:81604600-81616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr16:81606200-81616000	Weak transcription	Fetal Muscle Leg	muscle
26	chr16:81606200-81616400	Weak transcription	Fetal Lung	lung
27	chr16:81606400-81615800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr16:81606400-81616000	Weak transcription	Fetal Stomach	stomach
29	chr16:81606400-81616200	Weak transcription	Ovary	ovary
30	chr16:81606600-81615800	Weak transcription	Fetal Thymus	thymus
31	chr16:81606600-81618000	Weak transcription	Dnd41	blood
32	chr16:81606600-81619200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr16:81606800-81616200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr16:81608000-81615800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr16:81608000-81623400	Weak transcription	Fetal Brain Male	brain
36	chr16:81608400-81616200	Weak transcription	Adipose Nuclei	Adipose
37	chr16:81608600-81616000	Weak transcription	Brain Anterior Caudate	brain
38	chr16:81608600-81616000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr16:81608600-81616200	Weak transcription	Right Atrium	heart
40	chr16:81608800-81615800	Weak transcription	Primary B cells from cord blood	blood
41	chr16:81608800-81616000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr16:81609000-81615800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr16:81609400-81616000	Weak transcription	Brain Angular Gyrus	brain
44	chr16:81611800-81616400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:81612200-81618400	Enhancers	Placenta	Placenta
46	chr16:81612600-81615800	Weak transcription	Right Ventricle	heart
47	chr16:81612600-81616200	Weak transcription	Pancreas	Pancrea
48	chr16:81612600-81621400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr16:81612800-81616400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr16:81613600-81617000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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