Variant report

Variant	rs7199054
Chromosome Location	chr16:81627299-81627300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81626851..81628862-chr16:81635079..81636974,2	K562	blood:
2	chr16:81621915..81623701-chr16:81627145..81629070,2	MCF-7	breast:
3	chr16:81621040..81624026-chr16:81625221..81627874,3	MCF-7	breast:
4	chr16:81619065..81620878-chr16:81627122..81628842,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13330330	0.82[EUR][1000 genomes]
rs13332592	0.82[EUR][1000 genomes]
rs13338112	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16955583	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16955585	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16955597	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28550435	0.82[EUR][1000 genomes]
rs28619178	0.82[EUR][1000 genomes]
rs56310895	0.82[EUR][1000 genomes]
rs60525419	0.82[EUR][1000 genomes]
rs6564895	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7205559	1.00[CEU][hapmap]
rs73596491	0.82[EUR][1000 genomes]
rs73596494	0.82[EUR][1000 genomes]
rs73596498	0.82[EUR][1000 genomes]
rs73598408	0.82[EUR][1000 genomes]
rs73598410	0.82[EUR][1000 genomes]
rs73598418	0.82[EUR][1000 genomes]
rs74029200	0.82[EUR][1000 genomes]
rs74029201	0.82[EUR][1000 genomes]
rs74029202	0.82[EUR][1000 genomes]
rs74031205	0.82[EUR][1000 genomes]
rs74031217	0.82[EUR][1000 genomes]
rs9924458	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9924761	1.00[CEU][hapmap]
rs9926699	0.82[EUR][1000 genomes]
rs9929965	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9932038	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9933726	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9938967	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9939220	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81585600-81628600	Weak transcription	GM12878-XiMat	blood
2	chr16:81588200-81640800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr16:81593200-81641200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:81599000-81633000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:81616800-81640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:81617000-81634400	Weak transcription	Ovary	ovary
7	chr16:81617400-81634000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:81617400-81634000	Weak transcription	Fetal Lung	lung
9	chr16:81617400-81648800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:81617600-81633400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr16:81617600-81634000	Weak transcription	HUVEC	blood vessel
12	chr16:81618000-81630200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr16:81618200-81634000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:81618400-81633000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr16:81618400-81633000	Weak transcription	NHDF-Ad	bronchial
16	chr16:81619200-81630200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:81620000-81632800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr16:81620200-81632000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr16:81620200-81632800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr16:81621000-81633000	Weak transcription	Fetal Brain Female	brain
21	chr16:81621200-81632000	Weak transcription	Hela-S3	cervix
22	chr16:81621200-81632600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:81621600-81632800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:81622200-81632600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:81622400-81641400	Weak transcription	K562	blood
26	chr16:81622600-81641200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr16:81622800-81634200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:81623400-81633600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr16:81623400-81634400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr16:81623400-81641200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr16:81623600-81630200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr16:81623800-81643400	Weak transcription	Primary B cells from cord blood	blood
33	chr16:81624000-81631600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr16:81624000-81639800	Weak transcription	Dnd41	blood
35	chr16:81624000-81641000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr16:81624400-81640400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr16:81625000-81627400	Enhancers	Fetal Intestine Large	intestine
38	chr16:81625000-81627600	Genic enhancers	Fetal Intestine Small	intestine
39	chr16:81625000-81640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr16:81625200-81639800	Weak transcription	Primary T cells from cord blood	blood
41	chr16:81625400-81634400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr16:81625800-81627400	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr16:81626000-81627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr16:81626000-81627400	Genic enhancers	Fetal Stomach	stomach
45	chr16:81626000-81628000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr16:81626000-81631200	Weak transcription	Thymus	Thymus
47	chr16:81626200-81627400	Enhancers	Lung	lung
48	chr16:81626200-81630400	Weak transcription	Small Intestine	intestine
49	chr16:81626200-81631200	Weak transcription	Fetal Thymus	thymus
50	chr16:81626200-81634200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links