Variant report

Variant	rs13336702
Chromosome Location	chr16:59299776-59299777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13330690	1.00[AMR][1000 genomes]
rs13380739	1.00[AMR][1000 genomes]
rs28572258	1.00[AFR][1000 genomes]
rs28582720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589368	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28662832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28735533	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887215	1.00[AMR][1000 genomes]
rs8049934	1.00[AMR][1000 genomes]
rs8054613	1.00[AMR][1000 genomes]
rs9924985	1.00[AMR][1000 genomes]
rs9925683	0.90[AFR][1000 genomes]
rs9936544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59297400-59299800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links