Variant report

Variant	rs28589368
Chromosome Location	chr16:59362109-59362110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12103393	0.95[AFR][1000 genomes]
rs13330690	1.00[AMR][1000 genomes]
rs13336702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495611	0.87[AFR][1000 genomes]
rs28572258	0.81[AFR][1000 genomes]
rs28582720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609024	0.91[AFR][1000 genomes]
rs28662832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28735533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28887215	1.00[AMR][1000 genomes]
rs9924985	1.00[AMR][1000 genomes]
rs9925683	0.81[AFR][1000 genomes]
rs9928426	0.91[AFR][1000 genomes]
rs9936544	1.00[AMR][1000 genomes]
rs9938806	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59332000-59362600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:59355000-59363000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr16:59355200-59363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr16:59359400-59364200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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